Resources
Antibiotics interfere with the evolution of plasmid stability
Wein T, Wang Y, Hülter NF, Hammerschmidt K, Dagan T. Curr Biol (2020)
A chronology of multicellularity evolution in cyanobacteria
Hammerschmidt K., Landan G., Tria F. D. K., Dagan T. (2019)
Phylogenetic rooting using minimal ancestor deviation
Tria, F. D. K., Landan, G. and Dagan, T. Nat. Ecol. Evol. 1, 0193 (2017).
Access the MAD paper:
Read-only in Nature format (no print or save).
Printable preprint (unformatted, including Supplementary Information).
Code and Data:
MAD programs for your choice - linux, mac and windows executables, as well as python3, matlab and R scripts. See the included readme file.
Datasets used in the paper.
DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes
Kadibalban A. S., Bogumil D., Landan G. and Dagan T. Genome Biol Evol (2016) 8 (5): 1590-1599. doi: 10.1093/gbe/evw102
ptt_tables.tgz
Chaperon_Interactors_Comparative_Genomics.tgz
Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction
Popa O., Landan G. and Dagan T. The ISME Journal (2016) 00, 1–12. doi:10.1038/ismej.2016.116
transduction.tgz
FullPtt_ProphageAnnotation.tgz
Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
Landan G. and Graur D. Mol Biol Evol (2007) 24 (6): 1380-1383. paper
Landan G. and Graur D. Pac Symp Biocomput. (2008) 15-24. paper