Resources

Phylogenetic rooting using minimal ancestor deviation

Tria, F. D. K., Landan, G. and Dagan, T. Nat. Ecol. Evol. 1, 0193 (2017).

Access the MAD paper:
Read-only in Nature format (no print or save).
Printable preprint (unformatted, including Supplementary Information).
Code and Data:
MAD programs for your choice - linux, mac and windows executables, as well as python3, matlab and R scripts. See the included readme file.
Datasets used in the paper.

DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes

Kadibalban A. S., Bogumil D., Landan G. and Dagan T. Genome Biol Evol (2016) 8 (5): 1590-1599. doi: 10.1093/gbe/evw102

ptt_tables.tgz
Chaperon_Interactors_Comparative_Genomics.tgz

Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction

Popa O., Landan G. and Dagan T. The ISME Journal (2016) 00, 1–12. doi:10.1038/ismej.2016.116

transduction.tgz
FullPtt_ProphageAnnotation.tgz

Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments

Landan G. and Graur D. Mol Biol Evol (2007) 24 (6): 1380-1383. paper
Landan G. and Graur D. Pac Symp Biocomput. (2008) 15-24. paper

COS program