Resources
Phylogenetic rooting using minimal ancestor deviation
Tria, F. D. K., Landan, G. and Dagan, T. Nat. Ecol. Evol. 1, 0193 (2017).
Access the MAD paper:
Read-only in Nature format (no print or save).
Printable preprint (unformatted, including Supplementary Information).
Code and Data:
MAD programs for your choice - linux, mac and windows executables, as well as python3, matlab and R scripts. See the included readme file.
Datasets used in the paper.
DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes
Kadibalban A. S., Bogumil D., Landan G. and Dagan T. Genome Biol Evol (2016) 8 (5): 1590-1599. doi: 10.1093/gbe/evw102
ptt_tables.tgz
Chaperon_Interactors_Comparative_Genomics.tgz
Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction
Popa O., Landan G. and Dagan T. The ISME Journal (2016) 00, 1–12. doi:10.1038/ismej.2016.116
transduction.tgz
FullPtt_ProphageAnnotation.tgz
Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments
Landan G. and Graur D. Mol Biol Evol (2007) 24 (6): 1380-1383. paper
Landan G. and Graur D. Pac Symp Biocomput. (2008) 15-24. paper