Resources

Antibiotics interfere with the evolution of plasmid stability

Wein T, Wang Y, Hülter NF, Hammerschmidt K, Dagan T. Curr Biol (2020)

EscherichiaPlasmidsABR.csv

A chronology of multicellularity evolution in cyanobacteria

Hammerschmidt K., Landan G., Tria F. D. K., Dagan T. (2019)

Data

Phylogenetic rooting using minimal ancestor deviation

Tria, F. D. K., Landan, G. and Dagan, T. Nat. Ecol. Evol. 1, 0193 (2017).

Access the MAD paper:
Read-only in Nature format (no print or save).
Printable preprint (unformatted, including Supplementary Information).
Code and Data:
MAD programs for your choice - linux, mac and windows executables, as well as python3, matlab and R scripts. See the included readme file.
Datasets used in the paper.

DnaK-Dependent Accelerated Evolutionary Rate in Prokaryotes

Kadibalban A. S., Bogumil D., Landan G. and Dagan T. Genome Biol Evol (2016) 8 (5): 1590-1599. doi: 10.1093/gbe/evw102

ptt_tables.tgz
Chaperon_Interactors_Comparative_Genomics.tgz

Phylogenomic networks reveal limited phylogenetic range of lateral gene transfer by transduction

Popa O., Landan G. and Dagan T. The ISME Journal (2016) 00, 1–12. doi:10.1038/ismej.2016.116

transduction.tgz
FullPtt_ProphageAnnotation.tgz

Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments

Landan G. and Graur D. Mol Biol Evol (2007) 24 (6): 1380-1383. paper
Landan G. and Graur D. Pac Symp Biocomput. (2008) 15-24. paper

COS program